Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs73485902 | chr16:1867563 | T/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs73488019 | chr16:1870424 | G/T | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs73488020 | chr16:1870461 | G/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs73752005 | chr6:88092421 | G/A | 1.84E-7 | 222 | 14.17 | 13.67 | 5.53 | KM Plot |
| CESC | rs74002490 | chr16:1866500 | A/T | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs74002493 | chr16:1867338 | C/G | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs74279208 | chr22:42993781 | G/A | 1.48E-5 | 221 | 14.9 | 13.63 | 5 | KM Plot |
| CESC | rs744002 | chr1:7934887 | C/A | 4.83E-5 | 224 | 14.8 | 13.72 | 10 | KM Plot |
| CESC | rs746767 | chr1:220958959 | A/G | 3.2E-14 | 224 | 13.8 | 16.68 | 3.33 | KM Plot |
| CESC | rs74879595 | chr8:109386343 | A/G | 9.24E-5 | 223 | 13.77 | 15.5 | 12.7 | KM Plot |
| CESC | rs7516412 | chr1:201976201 | C/T | 4.02E-8 | 217 | 15.18 | 16.4 | 1.67 | KM Plot |
| CESC | rs75254661 | chr17:29013128 | C/T | 0 | 220 | 14.1 | 10.2 | 1.23 | KM Plot |
| CESC | rs75345337 | chr17:29007056 | C/T | 0 | 220 | 14.18 | 9.83 | 1.23 | KM Plot |
| CESC | rs7570216 | chr2:225942595 | C/T | 3.51E-6 | 224 | 13.8 | 21.07 | 13.45 | KM Plot |
| CESC | rs761289 | chr1:15514334 | C/T | 9.39E-5 | 219 | 14.02 | 14.1 | 5.68 | KM Plot |